PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149752001
Common NameGSBRNA2T00149752001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 26800.1 Da    PI: 6.0784
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149752001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-281059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +i+n + rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl+e++s
  GSBRNA2T00149752001 10 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLFEFCS 59
                         69**********************************************96 PP

2K-box50.68.1e-18911701897
                K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          + e ++L kei    +++R++ Ge+L+ L+++eLqqLe++Le +l+++ ++K+e ++++i++lq+k  +l +enk+Lr+ 
  GSBRNA2T00149752001  91 NSENSRLSKEIADKSHQLRQMRGEELQGLNIEELQQLEKALEAGLTRVIETKSEKIMSEISDLQRKGMKLMDENKRLRQH 170
                          5688999******9***************************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.291161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.13E-39277No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-31378IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.59587180IPR002487Transcription factor, K-box
PfamPF014865.2E-1792169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLFEFCSS  60
SMREVLERHN LQSKNLEKLD QPSLELQLVE NSENSRLSKE IADKSHQLRQ MRGEELQGLN  120
IEELQQLEKA LEAGLTRVIE TKSEKIMSEI SDLQRKGMKL MDENKRLRQH GTQLTEENER  180
LGKQIYNNMH ERYGGVESEK TAVYEEGHSS ESITNAGNST GAPVDSESSD TSLRLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D6e-19269168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C6e-19269168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B6e-19269168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A6e-19269168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J7e-19369268Myocyte-specific enhancer factor 2A
3p57_I7e-19369268Myocyte-specific enhancer factor 2A
3p57_D7e-19369268Myocyte-specific enhancer factor 2A
3p57_C7e-19369268Myocyte-specific enhancer factor 2A
3p57_B7e-19369268Myocyte-specific enhancer factor 2A
3p57_A7e-19369268Myocyte-specific enhancer factor 2A
3kov_J7e-19369268Myocyte-specific enhancer factor 2A
3kov_I7e-19369268Myocyte-specific enhancer factor 2A
3kov_B7e-19369268Myocyte-specific enhancer factor 2A
3kov_A7e-19369268Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.159720.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149752001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9067180.0JQ906718.1 Brassica napus clone SVP-2 MADS-box protein SVP (SVP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302826.11e-170MADS-box protein SVP-like
SwissprotQ9FVC11e-153SVP_ARATH; MADS-box protein SVP
TrEMBLA0A078DKS81e-171A0A078DKS8_BRANA; BnaC04g35060D protein
STRINGBra030228.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-143MIKC_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]